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22 de ene. de 2018 · By Andrew Page based on version 3.11.2 (22-Jan-2018) Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (produced by Prokka (Seemann, 2014)) and calculates the pan genome. Using a standard desktop PC, it can analyse datasets with thousands of samples, something which is ...
Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (produced by Prokka) and calculates the pan genome. Using a standard desktop PC, it can analyse datasets with thousands of samples, something which is computationally infeasible with existing methods, without compromising the quality of the ...
15 de nov. de 2015 · We introduce Roary, a tool that rapidly builds large-scale pan genomes, identifying the core and accessory genes. Roary makes construction of the pan genome of thousands of prokaryote samples possible on a standard desktop without compromising on the accuracy of results.
Roary is a command line tool that can be used to find the genes shared and unique among a set of bacterial strains. Learn how to use Roary with annotated genome files, and how to visualize the results with Phandango.
20 de jul. de 2015 · Roary is a Perl-based software that rapidly builds large-scale pan genomes from annotated de novo assemblies of related prokaryotic isolates. It uses a combination of CD-HIT, BLAST and MCL to cluster genes and identify the core and accessory genome.
Rapid large-scale prokaryote pan genome analysis. Contribute to sanger-pathogens/Roary development by creating an account on GitHub.
17 de dic. de 2019 · Roary is a Linux-native software that estimates the pangenome of a species based on multiple genomes. Learn how to install, run, and interpret Roary with this protocol article.
